PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G245800.1
Common NameB456_002G245800
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 290aa    MW: 31478.1 Da    PI: 7.3151
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G245800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.00017188210123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++Cg  Fs+   L  H+r+H
  Gorai.002G245800.1 188 HECSICGAEFSSGQALGGHMRRH 210
                         78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139126.8E-10120145IPR007087Zinc finger, C2H2
SuperFamilySSF576673.28E-6120143No hitNo description
SMARTSM003550.45121143IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.767121148IPR007087Zinc finger, C2H2
PROSITE patternPS000280123143IPR007087Zinc finger, C2H2
SuperFamilySSF576673.28E-6183210No hitNo description
PfamPF139127.4E-13187211IPR007087Zinc finger, C2H2
SMARTSM003550.01188210IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.743188210IPR007087Zinc finger, C2H2
PROSITE patternPS000280190210IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MEGQDDDVVC CKDDDHQLQI IKGKRTKRPR APPSSPPLTS VVASTTTTTT SSGGGGGAVG  60
VSPTITSSFD LAESSTEEEE REQDMANCLL VLSQGQTRKV KPPSPPPSEP STEAAVETDV  120
HQCKTCNRCF PSFQALGGHR ASHKKFKVVN DQDINNNRNK EDHRHYDQFN EKATTLSLHI  180
TSKKSRVHEC SICGAEFSSG QALGGHMRRH RTLTNAPTMT TPATATTTLD TVVRTSEQRK  240
KPRTVLQLDL NLPAPEDDLH KEPNNKVLSF ASEGKLLGFS ASSLVDCHY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6165670.0JX616567.1 Gossypium hirsutum clone NBRI_GE61324 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012468255.10.0PREDICTED: zinc finger protein ZAT5-like
TrEMBLA0A0D2QBI90.0A0A0D2QBI9_G
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2427934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.19e-37C2H2 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]